Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Creb1

Cell type

Cell type Class
Liver
Cell type
Hepatocytes
MeSH Description
The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Attributes by original data submitter

Sample

source_name
primary mouse hepatocytes
strain
C57BL/6
chip antibody
CREB (48H2) Rabbit mAb #9197

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
crosslinked material was lyzed and sonicated. Chromatin precipitated with antibody and DNA was purified by ethanol precipitation

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
42460074
Reads aligned (%)
94.2
Duplicates removed (%)
33.0
Number of peaks
28167 (qval < 1E-05)

mm9

Number of total reads
42460074
Reads aligned (%)
94.1
Duplicates removed (%)
33.0
Number of peaks
28166 (qval < 1E-05)

Base call quality data from DBCLS SRA